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Carlson Vs. Moore

In one corner, we have Moore’s law. In the other corner, there is Carlson’s curve.

Moore’s law— named after Gordon Moore, co-founder of Intel—famously predicted over 40 years ago that the transistor density of integrated circuits would double about every two years. So far, it’s been right.

Carlson’s curve—named after biologist Rob Carlson—refers to a graph showing the diminishing cost per base of sequencing DNA over time. Like transistor density, DNA sequencing prowess is similarly exponential, and showing no signs of slowing down.

Of course, neither of these is a fundamental law of nature, only empirical observations, and reality will inevitably deviate from the prediction someday.

So one naturally wonders, if it were a contest, which will hold steady the longest?

If one assumes a conventional mathematics of exponential growth, Moore’s law will be repealed first because it started first (approximately 1965 and 1990 for the two cases), and such a curve always levels off.

Deviations from a standard exponential would most likely come from new discoveries or technological innovation. For Moore’s law, the physical constraint of moving electrons in circuits is certainly limiting, as is the near certainty that a transistor can’t be smaller than a single atom. However, quantum computing or DNA computing might overcome these inherent limits of silicon chips.

For DNA sequencing (or DNA synthesis for that matter), the cost of chemical reagents and the ability to physically resolve DNA fragments cheaply are clearly limiting at some point. However, rapid advances in robotics, miniaturization, and “lab-on-a-chip” technologies can be expected to continue for the foreseeable future.

Based on nothing but the intuition that cost is easier to overcome than physics, my bet is that halving the price tag of DNA sequencing will outlast the course of integrated circuit doubling. Doubtless, readers can present counter-arguments, which I of course welcome and encourage.

Mind-Boggling Numbers

The universe is a big place. Estimates vary, but there are something like 1010 galaxies, 1022 stars, and 1080 atoms. Such numbers are hard to get your mind around, even in an era when trillions (1012) is commonly used when measuring government debt.

But this is just the observable universe. Cosmologists are now pretty convinced that the true reality is a multiverse, or many parallel universes existing at the same time. Naturally, one wonders how many such universes there might be.

Imponderable as this question may seem, a duo of physicists at Stanford University has taken a stab at answering it. The analysis can be found at the open access preprint site for physics and related disciplines. (Aside—how come chemists don’t do this?)

The mathematics of quantum fluctuations required to understand the work will tax most readers, as will the final answer: 10^10^10^7. This is a number that is virtually impossible to comprehend or even to write down. It has over 1010,000,000 digits!

With all those uniquely different universes, there surely is lots of potential for chemistry beyond even our wildest imaginations. Perhaps a different periodic table, unusual reactions, compounds we can’t imagine in our own universe. Maybe even altogether inconceivable life forms.

Apparently such gigantic numbers as 10^10^10^7 lead one to unchecked speculation. But perhaps a quantity we can better understand is Douglas Adams’s answer to the “ultimate question of life, the universe and everything,” as recounted in the estimable Hitchhikers Guide to the Galaxy—42. I can relate to that one.

Cancer News, Good and Bad

One of the reasons cancer therapy is effective is that conventional drugs are somewhat indiscriminate toxins. Thus, they kill lots of tumor cells, even if those cells are not similar in their molecular properties. This is a good thing since most tumor masses are thought to be heterogeneous at the cell and molecular levels.

The bad news is that indiscriminate toxins can also damage normal tissues. Hence, the agony of awful side effects that accompanies cancer treatment.

A new study (with 30 authors from several research centers in Canada and Britain) describes an incredibly detailed look at how a single tumor—metastatic breast cancer—acquires genetic heterogeneity over time (Nature 461 [8 October 2009], 809–813).

Starting from the initial diagnosis, the research team measured genetic changes over nine years that eventually led to spread of the cancer to other body sites.

The result? Significant molecular evolution occurs as a tumor grows and then spreads. This is the source for tumor cell heterogeneity and ultimately is why some cancer cells will be eradicated by therapy and others not.

It is also a real challenge to personalized medicine to create drugs that will target every variant cell type rather than indiscriminately carpet-bombing them all. Luckily, this new work is a starting point for doing just that.

On the iPod, Kindle, and Bedside Table

Like most contemporary people, I am a voracious consumer of information.  I readily concede that possession of information does not ensure wisdom, but at least it raises the possibility of a more informed judgment about the state of the world.

Leaving aside television and the Internet (and who wouldn’t be better off leaving these aside?), my main info sources are podcasts and books. Here are a few current favorites from each category.

My iPod is a constant companion on early-morning runs in whatever city I happen to find myself. Favored  science-related podcasts:

  1. Distillations, CHF’s own award-winning romp through the world of the molecular.
  2. Science Friday,the always perceptive Ira Flatow hosts NPR’s weekly broadcast on all things scientific. Unpredictable but reliably interesting content.
  3. Scientific American, hosted by the always curious Steve Mirsky.
  4. This Week in Science, a humorous and irreverent look at current science.

Books come in two familiar flavors: digital and analog. On the digital side, my travelling buddy Kindle currently holds three science books:

  1. Science Matters (Robert Hazen and James Trefil), short and snappy essays on each major branch of science and its major questions. Easy reading.
  2. What’s Next (Max Brockman), a more challenging set of 18 pieces by scientists peering into the future.
  3. The Invention of Air  (Steven Johnson), a biography of Joseph Priestley focusing on the intersections of his scientific, political, and spiritual dimensions.

On the bedside table are two volumes:

  1. The Age of Wonder (Richard Holmes), a totally charming history of literary and scientific explorations (some by the same people) at the cusp of the 18th and 19th centuries. Highly recommended, and the author will be visiting CHF next spring for a public lecture.
  2. Cosmic Imagery: Key Images in the History of Science (John D. Barrow), a sumptuous visual exploration of how images help us make sense of the physical world. Hint: anticipates forthcoming exhibits in the Museum at CHF.

Of course, I also read unchallenging, lowbrow, and unredeeming works, mostly in the fiction category. Probity prevents me from revealing any titles….

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